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Ontologies

kbase_ontology_source

Tenant: KBase · Snapshot 2026-04-29T21:35:53.838483+00:00

Reference

Schema status

discovered

Curation status

curated

Source

berdl-spark-connect://metrics.berdl.kbase.us:443

Philosophy

Standardize functional descriptions. Use controlled vocabularies for consistent annotation and cross-database integration.

Citation & Attribution

Provider: KBase

Schema Browser

Tables (3)

entailed_edge prefix statements

Key Tables

Table	Description	Rows
`entailed_edge`		—
`prefix`		—
`statements`		—

Atlas Pages

data type

Genes, Proteins, and Annotations

Gene and protein identifiers, functional annotation, literature coverage, orthology, and controlled vocabulary layers used to connect raw genomes to interpretable biology.

data type

Literature, Structure, Reference, and Ontology

Reference layers that connect sequence-level observations to papers, structures, ontology terms, and external identifiers.

data collection

Ontology

Ontology definitions (timed out during discovery)

Start Exploring

Access the full Ontologies data through BERDL JupyterHub.

Open JupyterHub