KBase Genomes
kbase_genomes
Tenant: KBase · Snapshot 2026-04-29T21:35:53.838483+00:00
Schema status
discoveredCuration status
curatedSource
berdl-spark-connect://metrics.berdl.kbase.us:443Philosophy
Provide foundational genome sequence data. Access raw sequences, structural annotations, and protein products for detailed analysis.
Citation & Attribution
Provider: KBase, DOE
Website: https://www.kbase.us/
Scale
Schema Browser
Tables (16)
contig contig_collection contig_collection_x_encoded_feature contig_collection_x_feature contig_collection_x_protein contig_x_contig_collection contig_x_encoded_feature contig_x_feature contig_x_protein encoded_feature encoded_feature_x_feature encoded_feature_x_protein feature feature_x_protein name protein
encoded_feature
| Column | Type | Description |
|---|
Sample Queries
Get genome metadata
SELECT *
FROM kbase_genomes.genome
LIMIT 20
Related Collections
Projects Using This Collection
Gene Function Ecological Agora
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Antibiotic Resistance Hotspots in Microbial Pangenomes
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Atlas Pages
KBase Tenant and Foundational Genome Data
KBase-provided genome, pangenome, phenotype, and ModelSEED resources that form the core comparative-genomics substrate.
data collectionPangenome Collection
Genome and pangenome tables for comparative genomics, conservation, openness, annotation, and cross-project derived products.
data typeGenomes and Pangenomes
Data type lens for genome metadata, pangenome structure, annotations, and species-level comparative genomics.
data typeGenes, Proteins, and Annotations
Gene and protein identifiers, functional annotation, literature coverage, orthology, and controlled vocabulary layers used to connect raw genomes to interpretable biology.
data collectionGenomes
Structural genomics data (contigs, features, protein sequences) in CDM format
opportunityPangenome Openness Confounder Audit
Audit whether openness-function relationships remain after controlling for taxonomy, genome quality, sampling density, and annotation completeness.
opportunityPhage Host-Range Reuse Map
Map where phage and mobile-element project outputs can become reusable host-range, defense, or genome-plasticity products.
topicPangenome Architecture and Gene-Content Evolution
Cross-project synthesis of pangenome openness, core/accessory structure, functional composition, conservation, and gene-content tradeoffs.