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Kbase Uniref100

kbase_uniref100

Tenant: KBase · Snapshot 2026-04-29T21:35:53.838483+00:00

Reference

Schema status

discovered

Curation status

discovered

Source

berdl-spark-connect://metrics.berdl.kbase.us:443

Citation & Attribution

Provider: KBase

Schema Browser

Tables (4)

cluster clustermember crossreference entity

Key Tables

Table Description Rows
cluster —
clustermember —
crossreference —
entity —

Projects Using This Collection

Gene Function Ecological Agora

Across the prokaryotic tree (GTDB r214; 293,059 genomes / 27,690 species), build a multi-resolution **innovation + acqui...

Atlas Pages

claim

Pangenome openness shapes functional opportunity

Pangenome openness and gene-content class affect which functions are stable, variable, mobile, or available for niche adaptation.

 data collection

Pangenome Collection

Genome and pangenome tables for comparative genomics, conservation, openness, annotation, and cross-project derived products.

 data type

Genomes and Pangenomes

Data type lens for genome metadata, pangenome structure, annotations, and species-level comparative genomics.

 data type

Genes, Proteins, and Annotations

Gene and protein identifiers, functional annotation, literature coverage, orthology, and controlled vocabulary layers used to connect raw genomes to interpretable biology.

 data collection

UniRef100

UniRef protein clusters at 100% identity

 topic

Pangenome Architecture and Gene-Content Evolution

Cross-project synthesis of pangenome openness, core/accessory structure, functional composition, conservation, and gene-content tradeoffs.

 topic

Fitness-Validated Gene Function

Synthesis of essential genes, metabolic dependency, ICA modules, dark genes, and functional annotation repair through fitness evidence.

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