Kescience Alphafold
kescience_alphafold
Tenant: KE Science · Snapshot 2026-04-29T21:35:53.838483+00:00
Schema status
discoveredCuration status
discoveredSource
berdl-spark-connect://metrics.berdl.kbase.us:443Citation & Attribution
Provider: KE Science
Schema Browser
Key Tables
| Table | Description | Rows |
|---|---|---|
alphafold_entries |
— | |
alphafold_msa_depths |
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Projects Using This Collection
AlphaFold MSA Depth as a Lens on the Bacterial Annotation Gap
Does AlphaFold MSA depth predict functional annotation richness in the bacterial pangenome, and is structural novelty (l...
Caulobacter Fur–Lipid A Loss
Why does inactivation of *fur* (the ferric uptake regulator) permit the loss of lipid A in *Caulobacter crescentus*, whe...
BERDL Data Atlas — Inventory, Topic Map, and Cross-Reference Synergies
What data is available in BERDL (across tenants, agencies, and programs), what biological topics does it cover, and wher...
Gene Function Ecological Agora
Across the prokaryotic tree (GTDB r214; 293,059 genomes / 27,690 species), build a multi-resolution **innovation + acqui...
Metagenome-Prioritized Phage Cocktails for Crohn's Disease and IBD
Which bacterial pathobionts are **enriched, ubiquitous, and non-protective** in IBD, UC, and Crohn's disease patients — ...
Atlas Pages
Literature, Structure, Reference, and Ontology
Reference layers that connect sequence-level observations to papers, structures, ontology terms, and external identifiers.
data collectionAlphaFold
AlphaFold protein structure metadata: UniProt→structure mapping and MSA depth (prediction quality). Joinable to any collection with UniProt/UniRef IDs.
opportunityRare-Earth RB-TnSeq Design
Design the first rare-earth fitness experiment by ranking candidate genes from cross-metal specificity, conservation, annotation, and structure evidence.
opportunityDark Gene Structure Prioritization
Prioritize dark gene families for mechanistic review by joining fitness, cofitness, annotation novelty, and AlphaFold structure signals.
opportunityLow-Confidence Collection Curation
Reduce Atlas caveat load by upgrading high-value low-confidence collection pages with schemas, reuse examples, and missing-data labels.