Microbial Discovery Forge

Schema status

discovered

Curation status

discovered

Source

berdl-spark-connect://metrics.berdl.kbase.us:443

Citation & Attribution

Provider: KE Science

Schema Browser

Tables (8)

pdb_citations pdb_entries pdb_ligands pdb_pfam pdb_sequence_clusters pdb_taxonomy pdb_uniprot_mapping pdb_validation

`pdb_sequence_clusters`

Column	Type	Description

Projects Using This Collection

BERDL Data Atlas — Inventory, Topic Map, and Cross-Reference Synergies

What data is available in BERDL (across tenants, agencies, and programs), what biological topics does it cover, and wher...

Gene Function Ecological Agora

Across the prokaryotic tree (GTDB r214; 293,059 genomes / 27,690 species), build a multi-resolution **innovation + acqui...

Metagenome-Prioritized Phage Cocktails for Crohn's Disease and IBD

Which bacterial pathobionts are **enriched, ubiquitous, and non-protective** in IBD, UC, and Crohn's disease patients — ...

Atlas Pages

data type

Literature, Structure, Reference, and Ontology

Reference layers that connect sequence-level observations to papers, structures, ontology terms, and external identifiers.

data collection

PDB

Protein Data Bank experimental structure metadata (resolution, R-factors, method, organism) and PDB→UniProt chain mapping from SIFTS. Joinable to AlphaFold and pangenome via UniProt accession.

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