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Phagefoundry Strain Modelling

phagefoundry_strain_modelling

Tenant: PhageFoundry · Snapshot 2026-04-29T21:35:53.838483+00:00

Domain

Schema status

discovered

Curation status

discovered

Source

berdl-spark-connect://metrics.berdl.kbase.us:443

Citation & Attribution

Provider: PhageFoundry

Schema Browser

Tables (18)

strainmodelling_experiment strainmodelling_experiment_metadata strainmodelling_experiment_metric strainmodelling_feature strainmodelling_feature_intervals strainmodelling_feature_metric strainmodelling_gene strainmodelling_genome strainmodelling_genome_set strainmodelling_genome_set_genomes strainmodelling_interaction strainmodelling_interval strainmodelling_organism strainmodelling_organism_metadata strainmodelling_protein_family strainmodelling_protein_family_features strainmodelling_protein_family_genes strainmodelling_sequence

Key Tables

Table Description Rows
strainmodelling_experiment —
strainmodelling_experiment_metadata —
strainmodelling_experiment_metric —
strainmodelling_feature —
strainmodelling_feature_intervals —
strainmodelling_feature_metric —
strainmodelling_gene —
strainmodelling_genome —
strainmodelling_genome_set —
strainmodelling_genome_set_genomes —
strainmodelling_interaction —
strainmodelling_interval —
strainmodelling_organism —
strainmodelling_organism_metadata —
strainmodelling_protein_family —
strainmodelling_protein_family_features —
strainmodelling_protein_family_genes —
strainmodelling_sequence —

Projects Using This Collection

BERDL Data Atlas — Inventory, Topic Map, and Cross-Reference Synergies

What data is available in BERDL (across tenants, agencies, and programs), what biological topics does it cover, and wher...

Metagenome-Prioritized Phage Cocktails for Crohn's Disease and IBD

Which bacterial pathobionts are **enriched, ubiquitous, and non-protective** in IBD, UC, and Crohn's disease patients — ...

SNIPE Defense System: Prevalence and Taxonomic Distribution in the BERDL Pangenome

How prevalent are SNIPE (Surface-associated Nuclease Inhibiting Phage Entry) homologues across the 293K-genome BERDL pan...

Atlas Pages

data type

Phage, Mobile Elements, and Defense

Host-specific phage browsers, pathogen genome views, and mobile-element signals used to reason about host range, defense, resistance, and engineered interventions.

 data collection

Strain Modelling

Strain modelling data (timed out during discovery)

Start Exploring

Access the full Phagefoundry Strain Modelling data through BERDL JupyterHub.

Open JupyterHub