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Phagefoundry Strain Modelling

phagefoundry_strain_modelling

Tenant: PhageFoundry · Snapshot 2026-04-29T21:35:53.838483+00:00

Domain

Schema status

discovered

Curation status

discovered

Source

berdl-spark-connect://metrics.berdl.kbase.us:443

Citation & Attribution

Provider: PhageFoundry

Schema Browser

Tables (18)

strainmodelling_experiment strainmodelling_experiment_metadata strainmodelling_experiment_metric strainmodelling_feature strainmodelling_feature_intervals strainmodelling_feature_metric strainmodelling_gene strainmodelling_genome strainmodelling_genome_set strainmodelling_genome_set_genomes strainmodelling_interaction strainmodelling_interval strainmodelling_organism strainmodelling_organism_metadata strainmodelling_protein_family strainmodelling_protein_family_features strainmodelling_protein_family_genes strainmodelling_sequence

`strainmodelling_genome`

Column	Type	Description

Projects Using This Collection

BERDL Data Atlas — Inventory, Topic Map, and Cross-Reference Synergies

What data is available in BERDL (across tenants, agencies, and programs), what biological topics does it cover, and wher...

Metagenome-Prioritized Phage Cocktails for Crohn's Disease and IBD

Which bacterial pathobionts are **enriched, ubiquitous, and non-protective** in IBD, UC, and Crohn's disease patients — ...

SNIPE Defense System: Prevalence and Taxonomic Distribution in the BERDL Pangenome

How prevalent are SNIPE (Surface-associated Nuclease Inhibiting Phage Entry) homologues across the 293K-genome BERDL pan...

Atlas Pages

data type

Phage, Mobile Elements, and Defense

Host-specific phage browsers, pathogen genome views, and mobile-element signals used to reason about host range, defense, resistance, and engineered interventions.

data collection

Strain Modelling

Strain modelling data (timed out during discovery)

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Access the full Phagefoundry Strain Modelling data through BERDL JupyterHub.

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