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Kescience Webofmicrobes

kescience_webofmicrobes

Tenant: KE Science · Snapshot 2026-04-29T21:35:53.838483+00:00

Domain

Schema status

discovered

Curation status

discovered

Source

berdl-spark-connect://metrics.berdl.kbase.us:443

Citation & Attribution

Provider: KE Science

Schema Browser

Tables (5)

compound environment observation organism project

compound

Column Type Description

Projects Using This Collection

BERDL Data Atlas — Inventory, Topic Map, and Cross-Reference Synergies

What data is available in BERDL (across tenants, agencies, and programs), what biological topics does it cover, and wher...

Gene Function Ecological Agora

Across the prokaryotic tree (GTDB r214; 293,059 genomes / 27,690 species), build a multi-resolution **innovation + acqui...

Metagenome-Prioritized Phage Cocktails for Crohn's Disease and IBD

Which bacterial pathobionts are **enriched, ubiquitous, and non-protective** in IBD, UC, and Crohn's disease patients — ...

Genotype × Condition → Phenotype Prediction from ENIGMA Growth Curves

Can we predict bacterial growth phenotype — at multiple resolutions from binary growth through continuous kinetics to co...

Web of Microbes Data Explorer

What does the `kescience_webofmicrobes` exometabolomics collection contain, which organisms overlap with the Fitness Bro...

Metabolic Consistency of Pseudomonas FW300-N2E3

For *Pseudomonas fluorescens* FW300-N2E3 (ENIGMA groundwater isolate), how consistent are exometabolomic outputs (Web of...

Atlas Pages

data type

Experimental Phenotypes, Traits, and Assays

Measured organism and gene behavior across laboratory conditions, including mutant fitness, growth phenotypes, utilization traits, and exometabolomic observations.

 data type

Metabolism, Biochemistry, and Pathways

Biochemical reference data and predicted or measured metabolic capabilities that support pathway-level interpretation and community design.

 data type

Multi-Omics, Embeddings, and Molecular Profiles

Metabolomics, proteomics, trait profiles, embeddings, and other matrix-style summaries that create reusable sample or organism representations.

 derived product

CF Formulation Scores

Reusable formulation scoring outputs for CF airway community design and Pseudomonas competition analysis.

 data collection

Web of Microbes

Curated microbial exometabolomics: metabolite production/excretion profiles (Kosina et al. 2018)

 opportunity

Ecotype Label Validation Benchmark

Build a benchmark that tests whether ecotype labels survive stricter metadata, batch, and holdout validation.

 opportunity

CF Formulation Score Reuse Test

Find a first downstream consumer for CF formulation scores by testing whether ranked carbon contexts improve strain or community design decisions.

 opportunity

Low-Confidence Collection Curation

Reduce Atlas caveat load by upgrading high-value low-confidence collection pages with schemas, reuse examples, and missing-data labels.

Atlas Reuse

ranking

CF Formulation Scores

candidate · 0 downstream projects

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