Microbial Discovery Forge

Schema status

discovered

Curation status

discovered

Source

berdl-spark-connect://metrics.berdl.kbase.us:443

Citation & Attribution

Provider: KE Science

Schema Browser

Tables (14)

curatedgene curatedpaper gene genepaper generif hassites paperaccess pdbclustinfo pdbligand seqhassite seqtoduplicate site snippet uniq

`gene`

Column	Type	Description

Projects Using This Collection

Caulobacter Fur–Lipid A Loss

Why does inactivation of *fur* (the ferric uptake regulator) permit the loss of lipid A in *Caulobacter crescentus*, whe...

BERDL Data Atlas — Inventory, Topic Map, and Cross-Reference Synergies

What data is available in BERDL (across tenants, agencies, and programs), what biological topics does it cover, and wher...

Metagenome-Prioritized Phage Cocktails for Crohn's Disease and IBD

Which bacterial pathobionts are **enriched, ubiquitous, and non-protective** in IBD, UC, and Crohn's disease patients — ...

PaperBLAST Data Explorer

What does the `kescience_paperblast` collection contain, how current is it, and what are its coverage patterns across or...

Atlas Pages

data type

Genes, Proteins, and Annotations

Gene and protein identifiers, functional annotation, literature coverage, orthology, and controlled vocabulary layers used to connect raw genomes to interpretable biology.

data type

Literature, Structure, Reference, and Ontology

Reference layers that connect sequence-level observations to papers, structures, ontology terms, and external identifiers.

data collection

PaperBLAST

Gene-to-literature links and curated sequence annotation coverage from PaperBLAST.

opportunity

Low-Confidence Collection Curation

Reduce Atlas caveat load by upgrading high-value low-confidence collection pages with schemas, reuse examples, and missing-data labels.

Start Exploring

Access the full Kescience Paperblast data through BERDL JupyterHub.

Open JupyterHub